Parallelization of Pairwise Alignment and Neighbor-Joining Algorithm in Progressive Multiple Sequence Alignment
نویسندگان
چکیده
منابع مشابه
An Efficient Progressive Alignment Algorithm for Multiple Sequence Alignment
Analyzing and comparing the string representations of sequences reveals a lot of useful information about the sequences. As new biological sequences are being generated at exponential rates, sequence comparison is becoming increasingly important to draw functional and evolutionary inference of proteins. This paper presents a partitioning approach for biomolecular sequence alignment that signifi...
متن کاملA comparative analysis of progressive multiple sequence alignment approaches using UPGMA and neighbor joining based guide trees
Multiple sequence alignment is increasingly important to bioinformatics, with several applications ranging from phylogenetic analyses to domain identification. There are several ways to perform multiple sequence alignment, an important way of which is the progressive alignment approach studied in this work. Progressive alignment involves three steps: find the distance between each pair of seque...
متن کاملPairwise Sequence Alignment
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متن کاملProbabalistic pairwise sequence alignment
We describe an new algorithm for visualizing an alignment of biological sequences according to a probabilistic model of evolution. The resulting data array is readily interpreted by the human eye and amenable to digital image techniques. We present examples using mRNA sequences from mouse and rat: three cytochromes and two zinc finger proteins. The underlying evolutionary model is derived from ...
متن کاملProbabilistic pairwise sequence alignment
We describe an new algorithm for visualizing an alignment of biological sequences according to a probabilistic model of evolution. The resulting data array is readily interpreted by the human eye and amenable to digital image techniques. We present examples using mRNA sequences from mouse and rat: three cytochromes and two zinc finger proteins. The underlying evolutionary model is derived from ...
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ژورنال
عنوان ژورنال: Indonesian Journal of Electrical Engineering and Computer Science
سال: 2018
ISSN: 2502-4760,2502-4752
DOI: 10.11591/ijeecs.v9.i1.pp234-242